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hong.fei's Projects

cfdna icon cfdna

Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA

chinese-poetry icon chinese-poetry

The most comprehensive database of Chinese poetry 🧶最全中华古诗词数据库, 唐宋两朝近一万四千古诗人, 接近5.5万首唐诗加26万宋诗. 两宋时期1564位词人,21050首词。

conta icon conta

Conta is an R package to detect cross contamination and source of contamination

diamond icon diamond

Accelerated BLAST compatible local sequence aligner.

dndscv icon dndscv

dN/dS methods to quantify selection in cancer and somatic evolution

gatk icon gatk

Official code repository for GATK versions 4 and up

hotspots icon hotspots

Identifying recurrent mutations in cancer

htslib icon htslib

C library for high-throughput sequencing data formats

kat icon kat

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

kmc icon kmc

Fast and frugal disk based k-mer counter

kraken2 icon kraken2

The second version of the Kraken taxonomic sequence classification system

krona icon krona

Interactively explore metagenomes and more from a web browser.

ml-nlp icon ml-nlp

此项目是机器学习(Machine Learning)、深度学习(Deep Learning)、NLP面试中常考到的知识点和代码实现,也是作为一个算法工程师必会的理论基础知识。

mykrobe icon mykrobe

Antibiotic resistance prediction in minutes

pavian icon pavian

🌈 Interactive analysis of metagenomics data

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