Name: Biophysics Group at the University of Erlangen-Nuremberg
Type: Organization
Bio: The Erlangen biophysics group studies the fundamental mechanical properties of cells, tissues, and complex soft matter.
Location: Erlangen, Germany
Blog: bio.physik.fau.de
Biophysics Group at the University of Erlangen-Nuremberg's Projects
A simple data set for 3D Particel Image Veolcimetry
scripts to use the bioprinter
Analysis of cingle cell invasion depth of cells beeing seeded of top of a (collagen-)gel. Cells need to be imaged with BF and Fluo (Hoechst).
Click Points is a program written in the Python programming language, which serves on the one hand as an image viewer and on the other hand as an data display and annotation tool. Every frame can be annotated by a description, marked points/tracks, or marked areas (paint brush). This helps to view image data, do manual evaluation of data, help to create semi-automatic evaluation or display the results of automatic image evaluation.
Some example datasets for ClickPoints
a low cost easy to use deformation cytometer
example data for pyTFM
Evaluates fiber orientation
A clickpoints addon to analyze the alignement of vector fields close to manually drawn lines
Master thesis Alexander Winterl, tracking algorithms for penguins and cells.
2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy
clickpoints addon to compare two segmentation algorithms
Invasiveness of 3D spheroids using the radial cell density profile.
collection of tracking scripts by Andreas