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analysis-atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

analysis-hic

Analysis of Chromosome Conformation Capture data (Hi-C)

analysis-isoseq

GENE-SWitCH project Iso-Seq analysis pipeline

analysis-smrnaseq

A small-RNA sequencing analysis pipeline

analysis-tagada

GENE-SWitCH project RNA-Seq analysis pipeline

angular_skeleton

atac-training-apr-2023

atac-training-feb-2023

bayesrco

A software package that includes BayesCpi, BayesR, BayesRC, and two extensions of BayesRC to overlapping data: BayesRC+ and BayesRCpi

bedtobigbed

Python script to convert CAGE BED files to BigBed format

comm-data-portal-projects

Repository to capture FAANG project information and images for project specific pages on FAANG data portal.

comm-format-transcriber

File conversion utility for the ftp redesign project

comm-geolocation

This is a series of scripts for plotting maps of FAANG members

comm-methylation

This repo is to collect the FAANG methylation group's code and pipelines

comm-network-biology

Code and pipelines from the FAANG Network Biology working group

dcc-bulk-data-downloader

dcc-dev-environment

dcc-documentation

dcc-ena-submissions-frontend

dcc-eurofaang-ri-be

dcc-eurofaang-ri-fe

dcc-genome-signal-tracks

dcc-kubernetes-configs

dcc-metadata

This repo contains the faang metadata schema and associated tools

dcc-portal-backend

This code supports the backend operations of the FAANG data portal

dcc-portal-frontend

This code supports the frontend operations of the FAANG data portal

dcc-portal-proxy

FAANG portal python proxy

dcc-python-notebooks

Python notebooks

dcc-query-api

dcc-reference-data-builder

Build reference files required for genomic analysis from a gzipped fasta file and a gff file