Comments (3)
Apologies for the oversight. These scripts are now part of the repo via commit 100c662
from hrdetect-pipeline.
Thanks. And I am studying your paper about this pipeline. But I have no access to the data, the supplementary files of the paper. Could you share these important files or the testing sets for this pipeline?
BTW, my email is [email protected]. THX ,again.
from hrdetect-pipeline.
Yes, this was a known issue that Supplementary Information was not linked at the time of publication. Clinical Cancer Research has not corrected this issue, and you can find the PDF under the "Figures and Data" tab of the online version of the paper.
Here is a direct link to the supplementary information: http://clincancerres.aacrjournals.org/highwire/filestream/160228/field_highwire_adjunct_files/0/185837_2_supp_4280021_9wj959.pdf
from hrdetect-pipeline.
Related Issues (15)
- some bugs
- scripts/basic-functions/row_bind_tables.R missing HOT 1
- TAI score assumes no "chr" strings in segments.tsv
- LST score only compares lohtype but ignore differences in copy_number HOT 2
- Overlapping ranges/segments after call of filter_ranges in run_test
- clustered SVs
- Could not read from remote repository HOT 3
- make dependencies error HOT 1
- Example input files HOT 2
- library(deconstructSigs) missing HOT 1
- Installation issues
- SV input type
- Error in snakemake
- reported range of HRDscores
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