Comments (4)
Any random effect structure can be specified directly. Just specify directly.
# Summary, univariable and multivariable analyses of the form:
# lme4::glmer(dependent ~ explanatory + (1 | random_effect), family="binomial")
explanatory = c("age.factor", "sex.factor", "obstruct.factor", "perfor.factor")
random_effect = "(1 | hospital) + (1 | rx.factor)"
dependent = "mort_5yr"
colon_s %>%
finalfit(dependent, explanatory, random_effect = random_effect)
We don't include random effect variances in the output directly.
colon_s %>%
glmmixed(dependent, explanatory, random_effect = random_effect)
Some details here:
https://finalfit.org/articles/all_tables_examples.html#mixed-effects-random-slope-model
Hope that helps.
from finalfit.
This is really helpful, thank you! Apologies for missing this.
Is there a way to include the random effects in the univariable analyses?
from finalfit.
That's one we've not been asked for before, but is obviously useful.
You could do this.
colon_s %>%
finalfit(dependent, explanatory, random_effect = random_effect, keep_fit_id = TRUE) %>%
ff_merge(
explanatory %>%
purrr::map_df(~ glmmixed(colon_s, dependent, .x, random_effect = random_effect) %>%
fit2df(estimate_suffix = " (univariable with RE)")
),
last_merge = TRUE
) %>%
dplyr::relocate(7, .before = 6) # reorder columns
Dependent: Mortality 5 year Alive Died OR (univariable) OR (univariable with RE) OR (multilevel)
Obstruction No 408 (56.7) 312 (43.3) - - -
Yes 89 (51.1) 85 (48.9) 1.25 (0.90-1.74, p=0.189) 1.23 (0.83-1.83, p=0.310) 1.23 (0.82-1.83, p=0.313)
Perforation No 497 (56.0) 391 (44.0) - - -
Yes 14 (51.9) 13 (48.1) 1.18 (0.54-2.55, p=0.672) 1.07 (0.44-2.57, p=0.888) 1.02 (0.42-2.46, p=0.969)
from finalfit.
That works beautifully - many thanks!
from finalfit.
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