Comments (1)
Thanks for this.
Yes, it isn't currently implemented in the finalfit()
function.
This is the work around:
library(finalfit)
library(dplyr)
explanatory = c("age", "sex.factor", "obstruct.factor", "perfor.factor")
dependent = 'mort_5yr'
colon_s %>%
summary_factorlist(dependent, explanatory, cont = "median") %>%
bind_cols(
colon_s %>%
finalfit(dependent, explanatory) %>%
select(5, 6)
)
label levels Alive Died OR (univariable) OR (multivariable)
Age (years) Median (IQR) 60.0 (15.0) 62.0 (17.0) 1.00 (0.99-1.01, p=0.986) 1.00 (0.99-1.01, p=0.682)
Sex Female 243 (47.6) 194 (48.0) - -
Male 268 (52.4) 210 (52.0) 0.98 (0.76-1.27, p=0.889) 0.98 (0.75-1.27, p=0.869)
Obstruction No 408 (82.1) 312 (78.6) - -
Yes 89 (17.9) 85 (21.4) 1.25 (0.90-1.74, p=0.189) 1.25 (0.90-1.75, p=0.189)
Perforation No 497 (97.3) 391 (96.8) - -
Yes 14 (2.7) 13 (3.2) 1.18 (0.54-2.55, p=0.672) 1.13 (0.51-2.44, p=0.764)
from finalfit.
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from finalfit.