Comments (2)
Thanks Omar, it's a good idea. Appreciate your thoughts on this.
There's the ff_remove_ref()
function for regression tables, but nothing that will currently work after summary_factorlist()
.
This should work for all instances. Looks awful of course but if useful could be wrapped up into a nicer function.
Let me know what you think.
explanatory = c("age", "nodes", "age.factor", "sex.factor", "obstruct.factor", "perfor.factor")
dependent = 'mort_5yr'
colon_s %>%
summary_factorlist(dependent, explanatory, column = TRUE) %>%
dplyr::mutate(label = ifelse(label == "", NA, label)) %>%
tidyr::fill(label) %>%
dplyr::group_by(label) %>%
dplyr::filter(levels %in% c("Mean (SD)", "Median (IQR)") | row_number() != 1) %>%
dplyr::ungroup() %>%
dplyr::mutate_at(-c(1, 2), ~ stringr::str_extract(., "(?<=\\().+?(?=\\))")) %>%
rm_duplicate_labels() %>%
data.frame()
from finalfit.
This is done.
explanatory = c("age", "age.factor", "sex.factor", "obstruct.factor", "perfor.factor")
dependent = 'mort_5yr'
colon_s %>%
summary_factorlist(dependent, explanatory)
label levels Alive Died
1 Age (years) Mean (SD) 59.8 (11.4) 59.9 (12.5)
2 Age <40 years 31 (6.1) 36 (8.9)
3 40-59 years 208 (40.7) 131 (32.4)
4 60+ years 272 (53.2) 237 (58.7)
9 Sex Female 243 (47.6) 194 (48.0)
10 Male 268 (52.4) 210 (52.0)
5 Obstruction No 408 (82.1) 312 (78.6)
6 Yes 89 (17.9) 85 (21.4)
7 Perforation No 497 (97.3) 391 (96.8)
8 Yes 14 (2.7) 13 (3.2)
colon_s %>%
summary_factorlist(dependent, explanatory) %>%
ff_remove_ref() %>%
ff_percent_only()
label levels Alive Died
1 Age (years) Mean (SD) 59.8 (11.4) 59.9 (12.5)
2 Age <40 years 6.1 8.9
3 40-59 years 40.7 32.4
4 60+ years 53.2 58.7
5 Sex Male 52.4 52.0
6 Obstruction Yes 17.9 21.4
7 Perforation Yes 2.7 3.2
from finalfit.
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from finalfit.