evolbeginner Goto Github PK
Name: SishuoWang
Type: User
Company: CUHK
Bio: Sishuo Wang, Dept Microbiol, faculty of Med, CUHK. Dabbling in phylogenetics, microbial evolution and genomics.
Location: Hong Kong
SishuoWang's Projects
angst
A wrapper of AnGST (https://github.com/almlab/angst)
basic_process_mini
basic_process_mini
basic_sequence_processing_mini
mini scripts for sequence processing
bioruby
bioruby
bioruby-taxa
TODO: one-line summary of your gem
brady
some scripts for brady project
bradyrhizobium-nif-hgt
bs_inbv
A tool to help generate the file in.BV when using "complex" substitution models for MCMCtree. Particularly, the hessian is approximated by a bootstrap approach.
dating
custom scripts for molecular clock analysis, mainly mcmctree
dimer_project
dna_methyl_parsing
domain_drawing
entrezefetch
gene_conversion_in_mtr
generatealnfromorthofinder
gff2fasta
graphics
scripts used to do graphic work
hahaha
hgt
HGT Rhizobiales
i-adhore3_helper
intermine
A powerful open source data warehouse system
iseece
A pipeline for identifying concerted evolution between duplicates based on gene position and phylogenetic evidence. See "Publications" below for the background.
jan_sl
linc
linc_dupli_associated
mcmctree
microrna_duplication_project
modeltest_phylo
A pipeline combining modeltest (jmodeltest, prottest), phylogenetic reconstruction (phyml, raxml), topology comparison (CONSEL)
multistate
for BayesTraits multistate analysis
ngs_basic_processing_mini_tools
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