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atom3d

Atomic tasks on molecules in three dimensions

betterposter_generator

Take a batch of figures and captions and feed them into the canonical 'betterposter' template.

erraser_benchmark_runner

Run benchmarks for ERRASER2

farna_benchmark

Data analysis scripts (decoupled from benchmark setup) for a benchmark of Rosetta RNA fragment assembly

fast_easy_cat

A fast, compiled silent file concatenation utility in Rust

flexizyme

Example workflow to set up flexizyme charging simulations

fmdv_homology

Files supporting a protocol for FMDV homology modeling from EMCV

modrnathread_server

A webserver enabling basic homology modeling on RNA backbones

openmm

OpenMM is a toolkit for molecular simulation using high performance GPU code.

protein-interface-analysis

ptc_swm_modeling

Scripts to set up, conduct, and analyze the results of stepwise design simulations on the bacterial ribosome's PTC

riboannotate

Annotate RNA secondary structure diagrams with extra information

ribotv3_simulations

Simulation setup scripts and summaries of output used in the design of RiboT-v3

rna-puzzles-normalized-submissions

Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip

rna_homology_modeling

A framework for RNA homology modeling served on Google App Engine

rosetta_clone_tools

A public repository with scripts and tools for cloning and setting up RosettaCommons repositories.

rosetta_rna_homology_modeling_examples

Examples of how to use Rosetta protocols to homology model two different RNA targets

strand_contact_analysis

Scripts used for analysis of strand contacts in protein structures

tensorflow-cmake

TensorFlow examples in C, C++, Go and Python without bazel but with cmake and FindTensorFlow.cmake

tether_forward_folding

Forward folding with Rosetta of RNAMake tether designs

trna_thread

Scripts and resources for automated homology modeling of tRNAs

vienna_guided_mc

Secondary structure-guided ribosome design through MCMC simulation