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atac_frag_simulation

behaviorflow

Code package that allows meta analyses of unsupervised behavior results

circrnas

diffutr

The diffUTR R package streamlines differential exon usage (DEU) analyses, and leverages existing DEU tools and alternative poly-adenylation site databases to enable differential 3' UTR usage analysis.

dlcanalyzer

R Scripts to analyze deep lab cut point data and related data

dtfab

Benchmark of methods for Differential TF activity from ATAC-seq data

dtfaib

enrichmir

miRNA target enrichment analysis

enrichmir_benchmark

enrichmir_paper

scripts accompanying the enrichMiR paper

epiwraps

Wrappers for dealing and plotting with epigenomics data

ethepigen2023_materials

Materials for the 2023 ETH course "Bioinformatic approaches to regulatory genomics and epigenomics"

ethepigen2024_materials

Materials for the 2024 ETH course "Bioinformatic approaches to regulatory genomics and epigenomics"

fischer-kretschmer-et-al.-2023

Code, objects and rendered rmarkdowns for

glucorticoid-protacs

mg_a549

privitera-et.-al.-2023

Effects of different NA modulations on the acute stress response

pupillometry

A shiny app for pupillometry data analysis

scanmir

A set of tools for scanning for miRNA binding sites and working with affinity models

scanmir_paper

scanmirapp

Shiny app (and further functionalities) for scanMiR

scanmirdata

miRNA affinity models for the scanMiR package

sperm-rna-dex

stressomeexplorer

stresstrapreanalysis