Git Product home page Git Product logo
Institute of Environmental Science and Research photo

esr-nz Goto Github PK

repos: 24.0 gists: 0.0

Name: Institute of Environmental Science and Research

Type: Organization

Bio: ESR is New Zealand’s Crown Research Institute that specialises in science relating to people and communities.

Location: New Zealand

Blog: http://www.esr.cri.nz

Institute of Environmental Science and Research's Projects

abritamr icon abritamr

A pipeline for running AMRfinderPlus and collating results into functional classes

covid_in_wastewater icon covid_in_wastewater

Quantitative data about how much SARS-CoV2 virus is found in New Zealand's wastewater

gtw icon gtw

Genomics training week notes and install instructions

human_genomics_pipeline icon human_genomics_pipeline

A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

human_genomics_pipeline_gpu icon human_genomics_pipeline_gpu

A GPU accelerated Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using bwa/GATK4.

pox_poc_pipeline icon pox_poc_pipeline

Point of care species ID by kraken2 ONT read classification for Xaiver platform

vcf_annotation_pipeline icon vcf_annotation_pipeline

A Snakemake workflow to filter, annotate and prepare variant call format (VCF) data for scout using GATK4, SnpSift, VEP and genmod. Designed to be used after human_genomics_pipeline.

viralrecon icon viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.