Comments (3)
Hi!
Thank you for making SINA parallelizable in v1.4.0! Will this be fixed in the near future?
Unfortunately, I mostly only use the search stage, so right now I have to brute force by splitting the input, run SINA in parallel processes using GNU parallel, and then combine.
-Kasper
from sina.
I don't know yet. I'm working on an internal search engine hopefully obviating the need for the ARB PT server.
from sina.
Alright, great. I imagine that would take some time. Thanks
from sina.
Related Issues (20)
- Problems installing sina on macOS Big Sur HOT 1
- Failing to load db index HOT 4
- error while loading shared libraries: libtbb.so.2 HOT 6
- Support arb 7.0
- Compile issue on Debian 10 (linker command line)
- Problem building / installing documentation on Debian 10
- libboost library conflict with qiime2 HOT 3
- sina not working within a docker container HOT 2
- Terminatin with signal 11 error HOT 2
- MSA output of unequal length HOT 1
- difficulties using SINA with my own MSA HOT 2
- Values calculated in Log are not exportable to CSV (fn_nuc)
- Implement banded alignment
- Problems with LCA quorum HOT 7
- Base shift in copied alignment HOT 3
- How could I calculate identity between two 16S rDNA sequence? HOT 1
- necessary fields for "-f" not stated correctly in documentation, and also not given by "--arb-list-fields"? HOT 1
- Custom ARB database has no taxonomy fields HOT 1
- build failure ‘tbb_allocator’ is not a member of ‘tbb’ HOT 8
- --add-relatives outputs unexpected sequence ID HOT 3
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