epistasislab Goto Github PK

3dheatmap

3D Heatmap tool in Unity3D. Inst. for Biomed. Informatics, Univ. of PA

aliro

Aliro: AI-Driven Data Science

aliro-imager

aliroed-pi-gen

Tool used to create the AliroEd Raspberry Pi OS images

alzkb

alzkb-site

autoqtl

Automated Quantitative Trait Locus Analysis (AutoQTL)

breast-cancer-collection

Collection of different gene expression datasets

clinicaldatasources

Open or Easy Access Clinical Data Sources for Biomedical Research

conservation-machine-learning

Conservation Machine Learning

digen

Diverse and generative ML benchmarks

dtox

A knowledge-guided deep learning model for prediction and interpretation of drug toxicity

ebic

EBIC - AI-based parallel biclustering algorithm

ebic.jl

EBIC - a biclustering algorithm in Julia

epistasis_detection

Implementation of an efficient algorithm to compute linear regression models for epistasis that permit varied genetic encodings (penetrance functions) of the interactions of loci and provide statistical evidence for epistasis.

epistasislab.github.io

Identifying the complex genetic architectures of disease

eve

ENSEMBL VEP on EC2

evolved-stats

A research project using genetic programming to discover and optimize statistical tests.

exploration-trie-tpot

Comparison of evolutionary algorithms within TPOT using a trie to determine their exploratory nature

few

a feature engineering wrapper for sklearn

gecco2017-new-benchmarking-standards

Pages for workshops run by Epistasis Lab members

gecco2019-new-benchmarking-standards

A workshop for improving benchmarking standards in evolutionary computation research.

gpt4_and_review

Using GPT-4 to write a scientific review article: a pilot evaluation study

hibachi

Data simulation software that creates data sets with particular characteristics

imputation

https://www.biorxiv.org/content/early/2017/07/24/167858

interpret_ehr

Interpretation of machine learning predictions for patient outcomes in electronic health records

kragen

Software to implement GoT with a weviate vectorized database

latent_phenotype_project

logistic_pca

An efficient python implementation of logistic PCA for general use

lpc

Documentation and informational resources for LPC use