Related Issues (20)
- ensure blast 2.9.0 or above is being used HOT 1
- Consider an additional "rm.unclassified" filter
- -s is an available flag, but I think is not catered for in code HOT 1
- messages
- provide error when taxids not found
- blacklisting should be done separately for each binning level
- blacklisting if NCBI taxids not being used HOT 1
- change default tops to be "off"
- double check the family level unknown selection
- min_pident seems wrong (negative numbers and 0s) HOT 2
- install problem? metabinkit_blast and metabinkit_blastgendb
- README and documentation HOT 1
- metabinkit_blastgendb not creating db HOT 4
- ERROR checking new db using metabinkit_blastgendb HOT 1
- Odd warning about taxid missing even though taxdb up to date HOT 2
- using top of 0.1 HOT 1
- Add option to remove in-silico generated NCBI accessions HOT 1
- -taxidlist option HOT 1
- makeblastdb checks HOT 1
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