Related Issues (20)
- Error with dbNSFP plugin HOT 6
- Inconsistent consequence annotation HOT 2
- Fail to install ensembl-release-111 on MacOS 14.2.1 (23C71) `fatal error: 'lzma.h' file not found` HOT 5
- WARNING: Ignoring non-supported 'five_prime_utr' feature_type from Homo_sapiens.GRCh38.111.gtf.bgzip.gz HOT 3
- Empty fields HGVSc and HGVSp of INFO - CSQ after VCF annotation via GTF and Fasta HOT 2
- Absence MANE and canonical annotation tags in output VCF. HOT 3
- VEP custom anotation not working with gnomad 4.0 file HOT 1
- ERROR: DBI module not found. VEP requires the DBI perl module to function HOT 2
- Annotating with GNOMAD custom vcf makes frequencies become STRING and unable to filter HOT 7
- VEP 111 HGVS C dot annotating dups as Insertions HOT 4
- filter_vep not correctly filtering CADD_PHRED scores HOT 10
- [Question] What is the definition of "coding_sequence_variant"? Why are frameshifts no coding sequence variant? HOT 4
- can not call method "seq" HOT 6
- Normalisation-based allele matching algorithm and custom file HOT 2
- False warning messages with vep 111 when using the range input format HOT 4
- All variants are intergenic with NCBI GFF HOT 6
- filter_vep output file larger than input file HOT 2
- WARNING: Chromosome 22 not found in annotation sources or synonyms on line 1 HOT 8
- VEP in Google Batch fails when more than 5 custom databases are passed HOT 6
- trouble finding cache file "MSG: ERROR: Cache directory /..." HOT 7
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from ensembl-vep.