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.doom.d

doom emacs config

1000-genomes-genetic-maps

Genetic maps interpolated to sites in the 1000 Genomes project

1kg_pop_freqs

Scripts to fetch MAFs for different populations from 1000 genomes

ailist-1

Augmented Interval Tree implemented in Cython/C

ancls

Accelerated Nested Containment List in Cython/C++

bing

bing: Biocore-NTNU command line gene query tool using mygene.info

bioconda-recipes

Conda recipes for the bioconda channel.

bioframe

Pandas utilities for tab-delimited and other genomic data files

bioinformatics-template

application note

build-python-package

(experimental) Snakefile to create wheels/sdist, upload to PyPI, update bioconda

cardano-documentation

chisel-template

chrom_sweep

Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.

cookiecutter

A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.

cookiecutter-cython

My Cython cookiecutter-template. Work in progress

create-trackhub

Create a UCSC trackhub from a sample-sheet and config file

cysweep

Experimenting with the fjoin/chromsweep algos in cython

deeptools

Tools to process and analyze deep sequencing data.

demo

A demo repository for My JSON Server (Alpha)

dotfiles

nothing to see here

ebs_wrappers

Trying out snakemake wrappers

ec-seq

Repo for Lenes RNA website

ec-seq2

Use django for EC-Seq

ecseq

SPA for ecseq database

effect-alleles

Find effect alleles for rs-ids from the GWAS Catalogue

epic2_supplementaries

Various workflows for the epic2 paper

everclear-alpha

everclear-old

fastindep

(Maintenance fork) Find the largest independent set of genetically unrelated samples

featurefetch

Fetch and sort regions from gtfs.