emo-bon Goto Github PK

analysis-results-cluster-01-data

place to contain the results of the different metagoflow runs -- each runs should put its results into its own subfolder, each of those should build up its own ro-crate metadata, those should list all its relevant content (either by remote reference or by local storage or by dvc pointer file)

analysis-results-profile

data-quality-control-action

emo-bon.github.io

emobon-dm-tools

collection of scripts and tricks that help automate collecting / formatting / checking the data from the observatories

emobon-ontology

space where we collaborate on assembling the ontology and shape files

ena-sample-registration-action

governance-data

ro-crate holding the governance content for the emo-bon data-management

hackathon2022

Tutorials and further material for the "Learning Data Management and Workflow Analyses: a hackathon from the EMBRC’s EMO BON (marine metagenomics) project" hackathon

kgap-demo

k-gap project with example SPARQL queries on emo-bon triples

logsheet-downloader-action

metagoflow

MGnify oriented implementation for the Marine Genomic Observatories oriented pipeline, developed in the framework of an EOSC-Life funded project

metagoflow-data-products-ro-crate-example

This RO-Crate contains the results and metadata for the analysis of 1 raw sequence data sample (i.e. 1 sequence result (shotgun sequencing reaction) from 1 DNA sample from 1 sampling event at 1 site) using the MetaGOflow workflow, and it’s associated metadata. These will be primary data input to the FE VRE.

metagoflow-sequence-data-ro-crate-example

This RO-Crate contains the Quality-Controlled sequence data, the assembled contigs from the MegaHit workflow assembly step, and their associated metadata from a single run of the MetaGOflow workflow

mgf-s3-prototype

mgf-ssh-prototype

observatory-aaot-crate

observatory-bergen-crate

observatory-bpns-crate

observatory-emt21-crate

observatory-esc68n-crate

observatory-hcmr-1-crate

observatory-iuieilat-crate

observatory-lmo-crate

observatory-mbal4-crate

observatory-nrmcb-crate

observatory-oob-crate

observatory-osd74-crate

observatory-piegetxo-crate

observatory-profile