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cadnano2

Cadnano2

cadnanomodifier

Script for modification of DNA Origami nano structure designed with caDNAno.

dnafit

collection of scripts related to the fitting of pseudoatomic models into cryo-EM maps of DNA-Origami

fitviewer

Jupyter Notebook: viewer tool for pseudoatomic models fitting into cryo-EM electrondensity maps of lattice based DNA origami structures

foldingscreen_analysis

Analysis of TU Munich, Dietzlab - Standard Initial Folding Screen for DNA Origami

fre3dna

lattice free 3D Dna Origami

gitignore

A collection of useful .gitignore templates

ifs_data

illustrate

Biomolecular Illustration Tool

matlab_toolbox

matlab toolbox

nanodesign

Python package for working with nucleic acid structural designs.

oxdna

A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings

oxdna_analysis_tools

A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA

pdb-cif

namd (enrgMD) PDB to chimera PDB converter for DNA origami nano structures

pdb2cif

PDB to mmCIF conversion tool

picasso

A collection of tools for painting super-resolution images

picasso_addon

Extensions to picasso python package.

pytim

a python package for the interfacial analysis of molecular simulations

pytim-ext-networkhf

Extension to the PYTIM package for network analysis of hydrogen Fluoride

scaffold_orthogonality

simple script that analyses orthogonality of two DNA-Origami scaffold strands

sequencecheck

check for optimal scaffold permutation for DNA Origami with special sequences

tacoxdna

A collection of tools for DNA modelling

tiltedrsa

Random Sequential Adsorption of simple models for tilted molecules