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-choderalaberk-ancestral-materials

10.1101-653873

Associated scripts from "Neutrophils promote CXCR3-dependent itch in the development of atopic dermatitis" posted to biorxiv on 2019/5/31

10x_analysis

17_inducibility

Supplemental Code for Forcier et al., 2018

2016_rohban_submitted

2017_elife

This is the analysis code from de Gee JW, Colizoli O, Kloosterman NA, Knapen T, Nieuwenhuis S & Donner TH. 2017. Dynamic modulation of decision biases by brainstem arousal systems. eLife.

2017_elife-1

2017_misc_scripts

2017_solanaceae

Scripts submitted as part of Solanaceae acylsugar manuscript

2018_bacterial_pipeline_riboseq

Ribosome profiling pipeline for bacterial samples created by Fuad Mohammad.

2018_elife_alexander_et_al

Pipeline for Sox2 transcription analysis using MS2 fluorescence

2018_urai_choice-history-ddm

Urai AE, de Gee JW, Tsetsos K, Donner TH (2018) Choice history biases subsequent evidence accumulation. bioRxiv:251595.

2018lhsplitcode

Analysis code for 2018 split paper

2018linaresaguilarlopezmoliner

Decoupling sensory from decisional choice biases in perceptual decision making (published in eLife)

2019-11-allelic_bias_in_fire_ant_supergene

2019-elife-jagannathan_et_al

2019_dhfr_lon

2019_dmel_testis_singlecell

This repository supports Witt, Benjamin, Svetec and Zhao 2019

2019_gc_heterogen

2019_hcn

2019_pupil_decisionmaking

2019_sdasd

Codes for ribosome profiling study of SD-ASD interaction

2020_elife_pupil_bias

2020_sorn_elife

2_color_dstorm

This repository contains Matlab based scripts and functions design to study object-based co-localization of 2 color dSTORM images. The program is based on Manders and overlap coefficients estimation between two sets of objects. It can be also used to evaluate univariate and bivariate spatial statistics functions for the sets of clusters and compare it to randomized set. This files are all beta versions and the database will be shortly updated.

3-step-map-aligment-model

Matlab code generates retino- and cortico-collicular mapping sequentilly based on correlated neuronal activity and EphA/ephrin-As gradients

3-step-map-aligment-model-2020

35621-spot-on-matlab

3cs

3Cs

3dhypocotyl