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arewebioyet.github.io

Rust in bioinformatics and computational biology

bioconda-recipes

Conda recipes for the bioconda channel.

contig-connectors

dotfiles

configs for various tools

geosketch

Geometry-preserving random sampling

kmercamel

KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.

kmers

A bit-packed k-mer representation (and relevant utilities) for rust

livecode

A repository of readmes, techniques, notes and other materials about how i live code in SuperCollider. A (sorta) companion repository to co34pt_livecode

mapquik

Efficient low-divergence mapping of long reads in minimizer space

mendel

generating musical compositions from DNA sequences

minisoclust

pas

Rust syntax in Turkish

pasha

parallel algorithms for small hitting set approximations

rouille

Rust programming, in French.

rust-debruijn

De Bruijn graphs in Rust

rust-mdbg

minimizer-space de Bruijn graphs (mdBG) for whole genome assembly

rust-parallelfastx

Parallel iteration of FASTA/FASTQ files, for when sequence order doesn't matter but speed does

rust-seq2kminmers

Iterate k-min-mers from a DNA sequence in Rust

seq

A high-performance, Pythonic language for bioinformatics

seq-mdbg

seq_io

FASTA and FASTQ parsing in Rust

sleaping

sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.

wfa

Rust WFA and WFλ

www

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes