eichlerlab Goto Github PK
Name: Eichler Lab
Type: Organization
Name: Eichler Lab
Type: Organization
A general read-alignment pipeline for PacBioHiFi, ONT, and Illumina data.
Repository for storing WDL workflows for execution in the AoU Researcher Workbench
Assess the QV of an assembly
assembly QC pipeline starts with foreign contamination screening
This is the github repository for the Eichler lab Amazon Web Services (AWS) pipelines
Detect outlier long-reads by using its Illumina counterpart.
Snakemake repository for basecalling with dorado
A pipeline for automating bax2bam (PacBio) over many cells per sample
This is an unsupported version of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappear at any time.
Creates a pdf booklet of tracks for visualizing array CGH / RPKM per family for large cohorts
Pipelines to create browser track compatible files from raw files
Pipeline for generating CCS sequence run summaries
CDR-Finder
Pipeline for generating SUNK pileups from clone sequence data
A collection of custom scripts for everyday long read analysis
A Snakemake pipeline for methylation analysis using long-read sequencing (third generation).
current a single script for Katy and Melanie
Find all significant local alignments between reads
Variant and annotation integration
Demultiplex Illumina runs by barcode
Pipeline for validation of de novo SVs
Repository for Testing Automatic Builds with Docker Hub
A Snakemake pipeline for differential methylation analysis using DSS
Pipeline to extract SUNKs from a given assembly
Code for analyses of great ape assemblies used in Kronenberg et al. 2017/8
Pipeline for pushing data to ENA for HGSVC
Analysis code for 1kg
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.