eggeling-lab-microscope-software Goto Github PK

acqengj

Java-based acquisition engine for Micro-manager

blob-b-gone

A lightweight tool to remove blob artifacts from 2D/3D point cloud data as produced by MINFLUX

deeptrack-2.0

DeepTrack-2.0

imswitch

ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

imswitch-uc2

ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

laserdiodedriver

micro-manager

Microscope control and image acquisition integrated with ImageJ.

microscope

Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performance and flexibility.

ndtiffstorage

N-dimensional, multiresolution file format for Micro-Manager

ndviewer

N-D multichannel multiresolution image viewer for Micro-Manager

pims

Python Image Sequence: Load video and sequential images in many formats with a simple, consistent interface.

piscat

PiSCAT is a python-based package with a graphical user interface for performing high-performance analysis on a variety of iSCAT measurements.

pycro-manager

Python control of micro-manager for customized data acquisition

pyvcam

Python3.X wrapper for Photometrics and QImaging PVCAM based cameras

rvt

Radial Variance Transform (RVT) python package

trackpy

Python particle tracking toolkit

trait2d

TRAIT2D is a cross-platform Python software package with compilable graphical user interfaces (GUIs) to support Single Particle Tracking experiments.

utterly_useful_utilities

A small collection of general utility functions I hack together and use. Feel free to reach out to me, should you have a request.