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Research Fisheries Biologist, Northwest Fisheries Science Center, NOAA Fisheries
Affiliate faculty, SAFS, University of Washington, Seattle


My eeholmes account has mostly sandboxy repos. To find my code and teaching products, look in the GH orgs that I contribute to (table below). For time series stuff: ATSA book, ATSA course, MARSS, MARSS with Stan.

org
links status
Applied Time
Series Analysis
GitHub org issues
NWFSC
Time Series
GitHub org issues
NWFSC
Math Bio
Fish Forecast
Rverse
Tutorials
Ocean
Satellite Tools
Upwelling project GitHub org issues

I am also a contributor to NMFS OpenSci, Openscapes, NMFS Openscapes, NMFS R User Group and R-Govys.

Finding my stuff: You can try searching by topic: https://github.com/search?q=topic:<TOPIC>+user:eeholmes&type=Repositories. Topics: R, MARSS, jupyter, earthdata, remote-sensing, upwelling, teaching.


The repositories in my eeholmes GitHub account are scientific products and are not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. The scientific results and conclusions, as well as any views or opinions expressed herein, are mine and do not necessarily reflect the views of NOAA or the Department of Commerce. In addition, this account may have forked repositories that are not my work.

Eli Holmes - NOAA's Projects

2021-cloud-hackathon icon 2021-cloud-hackathon

2021 NASA Cloud Hackathon co-hosted by PODAAC, NSIDC and LPDAAC, with support provided by ASDC, GESDISC, IMPACT and NASA Openscapes.

2021-noaa-nmfs icon 2021-noaa-nmfs

Openscapes Champions Cohort for the National Marine Fisheries Service (NOAA NMFS), Coordinated by NWFSC

arco-era5 icon arco-era5

Recipes for reproducing Analysis-Ready & Cloud Optimized (ARCO) ERA5 datasets.

atom icon atom

:atom: The hackable text editor

binder icon binder

Template for RStudio on Binder / JupyterHub

coastal_topobathy icon coastal_topobathy

Team project aimed at extracting sections of tracklines, and identifying bathymetry and coastal morphology - can be extended to other questions!

cov19 icon cov19

Package for exploring the CoV-19 data

design-ds-classroom icon design-ds-classroom

Materials for the Designing the Data Science Classroom workshop at rstudio::conf 2020

dfa icon dfa

working on new chapter for atsa-es

earthdata-cloud-cookbook icon earthdata-cloud-cookbook

A tutorial book of workflows for research using NASA EarthData in the Cloud created by the NASA-Openscapes team

eehutils icon eehutils

My personal utilities for papers, blogs, website

gap_products icon gap_products

This repository supports code used to create tables in the GAP_PRODUCTS Oracle schema. These tables include the master production tables, tables shared with AKFIN, and tables publicly shared on FOSS.

ghcr-badge icon ghcr-badge

Generate ghcr.io (GitHub Container Registory) container's status badge

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