Name: Edoardo Giacopuzzi
Type: User
Company: Human Technopole
Bio: Senior Bioinformatician in the genome analysis unit at Human Technopole. WGS analysis exploring non-coding and the dark side of the genome.
Twitter: supergecko
Location: Milan, Italy
awesome-bioinformatics
A curated list of awesome Bioinformatics libraries and software.
desktopdeployr
A framework for deploying self-contained R-based applications to the desktop
gel_import
Repository to conveniently import small files into GEL environment
gene-set-enrichment
Simple gene-set enrichment analysis using hyper-geometric test
github-ci
An example GitHub Action (CI) to build a Singularity container
green-varan
Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF
html_playground
Templates for HTML pages
hts-nim
nim wrapper for htslib for parsing genomics data files
misc_tools
Miscellaneous tools and useful scripts
nf_hpo_prioritize
Nextflow pipeline for HPO-based prioritization (GADO and Exomiser)
nf_variant_annotation
Nextflow variant annotation pipeline
nim-argparse
Argument parsing for Nim
nim_vcf2sql
convert VCF files to SQL db using Nim language
obonet
OBO-formatted ontologies → networkx (Python 3)
oneliners
Useful bash one-liners for bioinformatics.
packages
List of packages for Nimble
panelapp_tools
Simple class to interact with PanelApp API
pgx_project
Scripts and data used in PGx project report
ptdt
Polygenic Transmission Disequilibrium Test (pTDT)
pycore
core functions and classes for Python
quick_classify
A simple NN classifier to classify numeric data
rstudio_server_singularity
Run Rstudio-server with singularity instance
scripts
Miscellaneous Scripts
singularity_images
singularity recipes for bioinformatic analysis
sqlite-shiny
Shiny app to interact with SQLite DB
sv_annotation
Annotate SV VCF based on regions overlap
sv_intersect
Perform intersection on a SV cohort and compute case / control counts
sv_utils
Small utilities used in our SV pipeline
variant_explorer
Shiny app to explore and filter annotated variants results from V2
vcf_qc_report
Small R utilities to generate QC report for small variants VCF
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
