Comments (5)
uludag
commented on June 15, 2024
1
Thanks @hoelzer, I opened an issue, #50, to share the error I see when running the pipeline with Nextflow.
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mberacochea
commented on June 15, 2024
Hey Mahmut, thank you for reporting this. I'll fix this as soon as I can.
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uludag
commented on June 15, 2024
Thanks Martin, I have also tried running an example with nextflow with/without docker options. I had errors in both cases. This is the first time I'm running nextflow, I will try again later and report in a new issue if I think the errors need to be reported
--mahmut
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hoelzer
commented on June 15, 2024
Thanks Martin, I have also tried running an example with nextflow with/without docker options. I had errors in both cases. This is the first time I'm running nextflow, I will try again later and report in a new issue if I think the errors need to be reported
--mahmut
Hi @uludag yes, if you experience issues w/ the Nextflow version as well please feel free to open an issue! Thanks!
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mberacochea
commented on June 15, 2024
All the cwl files are using stable version of the .cwl spec. I'm closing this now, please let us know if you bump into issues with toil / cwltool and the cwl version of the pipeline.
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Related Issues (20)
- Unable to locate package docker-ce-cli HOT 1
- `annotate:ratio_evalue (1)` terminated with an error exit status (1) -- 'nextflow-autodownload-databases' Is a directory error HOT 1
- Can Prodigal-GV make 'real world' difference compared to original Prodigal? HOT 2
- Update ViPhOGs to remove old models that are associated with discontinued viral taxa HOT 5
- CWL discontinued
- No space left in /tmp HOT 2
- preprocess:rename idle state HOT 12
- Fix sankey plot visualization for undefined ranks
- Imitervirales assignment although not well supported by ViPhOGs
- Repository may be corrupted HOT 3
- Taxonomic ranks are inverted HOT 9
- Issue for running on ARM64-based Linux VM HOT 5
- wrapper_phage_contigs_sorter_iPlant HOT 1
- [Feature Request] Conda Distribution for Taxonomic Identification HOT 1
- Input file name collision on 'annotate:write_gff' HOT 2
- COBRA improves the completeness and contiguity of viral genomes assembled from metagenomes
- Missing process or function with name 'getFileSystem' HOT 3
- Not able to run "nextflow pull EBI-Metagenomics/emg-viral-pipeline" HOT 2
- Error executing process > 'annotate:hmmscan_viphogs (1)'
- CheckV failed HOT 4
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