Comments (5)
Hi Harish
Many thanks for contacting me.
Could you please provide me a small example script?
Are you using rdiamond
or metablastr
or both?
This will help me to help you better.
Cheers,
Hajk
from metablastr.
Hi!
These were run directly via diamond. At this stage, I was not using rdiamond or metablastr.
So basically, I ran diamond to obtain hits in the tabular (6) format, which is the default diamond output, and reading them via read_blast() function under metablastr.
from metablastr.
Hi,
Do you want to try read_diamond() in my R package rdiamond?
Cheers,
Hajk
from metablastr.
Passing an existing BLAST/DIAMOND output into the blast_reciprocal_best_hit()
function is currently not possible and I can see this as a feature request.
from metablastr.
Hi!
Sorry, I didn't get any notifications from GitHub. I'll play around with rdiamond!
from metablastr.
Related Issues (12)
- blast_best_reciprocal_hit nucleotide-protein comparison task error HOT 1
- Error: Internal error in `dict_hash_with()`: Dictionary is full.
- How can I load sequences from a CSV file and do the massive Blast search locally?
- Error in .Call2("new_input_filexp", filepath, PACKAGE = "XVector") : cannot open file '' HOT 2
- Package release request HOT 2
- blast_nt for nucleotide against NCBI database HOT 3
- additional functionality when extracting random sequences HOT 5
- Feature Request: exclude sequences with Ns
- Feature Request: extract the same regions from multiple samples
- function blast_protein_to_protein with argument is.subject.db = TRUE doesn't work with nr database HOT 5
- Feature request : add taxon id for each blast hit HOT 3
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