How to visualize about uni-dock HOT 3 OPEN

I'm glad you find Uni-Dock helpful!

For visualizing the input and results in 3D, there are several tools and Python packages available. Here are a few popular ones:

1. PyMOL: PyMOL is a widely used molecular visualization tool that can be extended with Python scripting. You can find tutorials and documentation on their official website: https://pymol.org/2/
   PyMOL can be installed using conda:

conda install -c conda-forge pymol

2. NGLview: NGLview is a Python package that allows you to visualize molecular structures and trajectories in Jupyter notebooks. It is an IPython widget that uses the NGL WebGL-based molecular viewer. You can find more information and examples in their GitHub repository: https://github.com/nglviewer/nglview
   NGLview can be installed using conda:

conda install -c conda-forge nglview

Happy visualizing!

from uni-dock.

Thank you so much! This is super helpful. BTW, if not limited to python, is there any other tool you would suggest as a better choice? Or you would think PyMOL would be the go-to option?

from uni-dock.

PyMOL is indeed a popular and powerful tool for working with molecular structures, and it's widely used in the scientific community. However, there are also other tools that you might consider like VMD (https://www.ks.uiuc.edu/Research/vmd/).

Especially, I would like to recommend Mol* Viewer (https://molstar.org/viewer/), a web-based Software-as-a-Service (SaaS) tool for molecular visualization. As a web-based tool, Mol* Viewer requires no installation and can be accessed from any device with an internet connection, providing a convenient and flexible solution for your molecular visualization needs.

from uni-dock.