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auditory_setup_calibration

bridgingregistrations

Bridging registrations to convert between different Drosophila template brains

ca_source_extraction_int

Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.

cmtk_matlab_wrapper

Matlab functions to interphase with CMTK toolbox

colormip_mask_search

ColorMIP_Mask_Search plugin for Fiji

computer_cluster_interface

Scripts to interface with computer clusters

drosadultbraindomains

Drosophila Adult Brain Domains

drosadulthalfbraindomains

Domains from confocal serial section image data used for the study "A Systematic Nomenclature for the Insect Brain" Kei Ito, et al.

drosadultvnsdomains

Drosophila Adult Ventral Nervous System Domains

drosophilidbridgingregistrations

Bridging registrations to convert between different Drosophila species template brains

facemap

matlab/python GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)

filterresolution

Code for filter resolution paper figure.

flycaiman

Calcium Imaging Processing Pipeline of 3D time series

master8_obj_matlab

Matlab Object to interface with Master8

meshvol_cpd_registration

Personal mirror of Andriy Myronenko's Coherent Point Drift library, which my plant registration method uses.

mirrorregistrations

Mirroring points in various Drosophila melanogaster template brain spaces

movieslider

Embeddable Matlab panel for playback, scrolling, and contrast/color map adjustment of 3D movies.

neuronbridger

R client utilities for interacting with the neuronbridge matching service

neurosummerschools

List of summer schools in neuroscience and related fields

normcorre

Matlab routines for online non-rigid motion correction of calcium imaging data

pulsetypeclassifier

pulses in, Pfast & Pslow out

ridgemodel

rlvm

MATLAB implementation of a rectified latent variable model for analysis of neural time series data.

shadederrorbar

Produce elegant shaded error bars in MATLAB

songsegmenter

stackviewer

A MATLAB wrapper of FIJI macros to display many channels per single stack or overlay many single channel stacks

treestoolbox

TREES toolbox