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andysbrainbook

This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

bayesfmri

BayesfMRI R package

bids-specification

Brain Imaging Data Structure (BIDS) Specification

bids-validator

Validator for the Brain Imaging Data Structure

bids-website

Website for the Brain Imaging Data Structure standard.

bids_stuff

brainlife.hugo

Brainlife Hugo Setup

ciftitools

ciftiTools R package

dcm2bids

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

edf2asc

electron-ezbids-test

electron_test

ezbids

A web service for semi-automated conversion of raw imaging data to BIDS

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

fsl_binaries

heudiconv

A flexible DICOM converter for organizing brain imaging data into structured directory layouts

irf_scripts

Collection of scripts for IRF tools

miscellaneous

An assortment of one-off scripts

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

niivue

a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.

nipy

Neuroimaging in Python FMRI analysis package

niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

pacpal_mri_study

psychopy_scripts

Psychopy scripts from various studies conducted over the past several years

qsiprep

Preprocessing and reconstruction of diffusion MRI

reproin

A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners

rprime

R package for dealing with Eprime txt files

standard

🌟 JavaScript Style Guide, with linter & automatic code fixer

warehouse

Service that allows data warehousing and workfow orchestration