dkainer Goto Github PK
Name: David Kainer
Type: User
Location: Australia
David Kainer's Projects
blupga
R implementation of BLUP|GA genomic selection
consreg
Condition Specific Regulatory Network Analysis
easygc
A high throughput GC-MS analysis pipeline built on the Python PyMS library
irfloop
R Implementation of the iRF and iRF-LOOP algorithms using Ranger (fast) Random Forest under the hood
nanopore-pipe
a set of scripts for QC, alignment, assembly, variant calling of MinION nanopore data
partitionfinder
PartitionFinder discovers optimal partitioning schemes for DNA sequences.
phenoanalyzer
automated assessment of phenotypes prior to GWAS
pyms
Automatically exported from code.google.com/p/pyms
randomwalkrestartmh
A package to perform Random Walk with Restart on different types of networks
rwrtoolkit
a set of command-line and R tools for performing Random-walk with Restart analyses on multiplex networks in any species
rwrtoolkit-data
multiplex network objects (Rdata)
somatic-variation
Code for identifying somatic variants, even in reference-less species
somaticmutagen
scripts for introducing variants into fastq reads at specific locations wrt a reference genome
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