Comments (2)
from msisensor.
the MS sites in my bedfile which was covered at least 20 reads in tumor and normal sample?MSI score is equal to number_of_sites/total_number_of_sites?and can you explain what every column mean for MSI-H,MSI-L,(five marker,seven marker).thank you
from msisensor.
Related Issues (20)
- whether to use deduplicated bam HOT 14
- error while loading shared libraries HOT 1
- How difference value is calculated HOT 1
- can't find the description of the result file : output.prefix: msi score output HOT 3
- minimal comentropy threshold HOT 1
- Error "Same reference genome file should be used in both 'msisensor scan' and 'msisensor msi' steps!!!" HOT 2
- How to prepare correct bed file for msisensor msi? HOT 2
- Microsatellite loci for hg38 HOT 3
- Tagging release 0.6 HOT 3
- failed to open output files to write HOT 2
- How msisensor deal with soft clipping reads? HOT 1
- Bed file not loading HOT 1
- msisensor on whole exome HOT 1
- Get location of total sites HOT 1
- Reference genome issues in msisensor and number of somatic sites prediction in msisensor2 HOT 3
- The MSI loci in output.prefix_germline file HOT 1
- msisensor2 requires write permission to the models directory HOT 1
- MSI score greater than 1
- bam files after realignment & output_dis file
- feature request: ignore duplicate-marked reads HOT 1
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from msisensor.