Comments (7)
from msisensor.
Normal= 40X and Tumor=80X
from msisensor.
from msisensor.
The output for the Exome is:
Total_Number_of_Sites Number_of_Somatic_Sites %
1506 11 0.73
For the WGS is:
Total_Number_of_Sites Number_of_Somatic_Sites %
4474 1 0.02
I am using the example.bed file given in the test directory. So probably it is not an MSI-H sample. But it should still give me similar number of Somatic sites for WGS and WXS, right?
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from msisensor.
But then that should affect the "Total_Number_of_Sites" and not just the "Number_of_Somatic_Sites".
Or do you mean that, the 11 somatic sites in Exome might not be covered > 20X in WGS. So even though the total number of sites increased, we lost the somatic once due to coverage
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from msisensor.