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courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

datasciencecoursera

github repository for coursera course 'data science toolbox'

datasharing

The Leek group guide to data sharing

dkp_rstudio_presentation

Rstudio Presentation (hosted on Rpubs also) for Coursera (developing data products) course

dkp_shiny_app

A shiny app using Random Forests as a classifier for Iris data

dkp_slidify_presentation

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

first_slidify_document

test publishing a slidify document on github

fusioncatcher

Finder of Somatic Fusion Genes in RNA-seq data

fusionfilter

source code for FusionFilter

gatk

GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses

getting_cleaning_data_peer_assessment

This repo has the data and R scripts for the Data Science course 'Getting and Cleaning data', the peer assessment project

hotnet2

HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network

iterm2-color-schemes

Over 175 terminal color schemes/themes for iTerm/iTerm2 (with ports to Terminal, Konsole, PuTTY, Xresources, XRDB, Remina, Termite, XFCE, Tilda, and Terminator)

junctionseq

The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generation, high-throughput RNA-Seq experiments.

pml

post_cluster_tsne

Post combining t-sne reduction technique and cluster analysis

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

rcgh

repdata_peerassessment1

Peer Assessment 1 for Reproducible Research

rnaseqmut

RNA-Seq Mutation Detection

seqtk

Toolkit for processing sequences in FASTA/Q formats

sequencing_utilities

Scripts for processing next generation sequencing data and running sample batches using Docker

shiny_project

speedseq

A flexible framework for rapid genome analysis and interpretation

star-fusion

STAR-Fusion codebase

test1

test1 repo for trying out slidify and R presenter