Every time I use the Horizontal Gene Transfer I get segmentation fault, no matter what other variables I adjust? about avida HOT 4 CLOSED

Would you please provide your configuration files? What platform/compiler are you using?

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Compiler: cmake 2.8.12.2

Platform: Red hat, Centos 7

./avida -s $seed 51 -set COPY_MUT_PROB .0008 -set WORLD_X 100 -set WORLD_Y 100 -set ENABLE_HGT 1 -set EVENT_FILE andEvents.cfg -def INST_SET instset-heads.cfg -set ENVIRONMENT_FILE environment.cfg

Cfg.zip

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I think there's a problem with your config files. Try mine, and see if they do better. You'll also want to compile using my latest source from the following repo and branch: https://github.com/voidptr/avida/tree/HGT_Master

The HGT implementation in the master Avida branch/repo is extremely old and buggy.

Once you've got the code compiled, and the config files in place, you can run a simple HGT and changing environments experiment with:

./avida -v4 -set HGT_UPTAKE_RECOMBINATION_P 0.1 -set ENVIRONMENT_FILE environment__bonus0.cfg -set EVENT_FILE events_ce.cfg

101_GrazingHypothesis_vs_CE_CEOnly.zip

There are other examples of experimental treatments you can run in the run_list file, but omit the -s $seed portion, since those are for running on our cluster. Instead, you may say -s 100 (or whatever other number you want).

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