devangthakkar Goto Github PK

36daysoftype

Artwork created for 36 Days of Type, 2019.

adventurust

Learning Rust through Advent of Code 2023

assets

biopython

My fork of the BioPython repo where I test custom branches

calling_snps_indels

Code for calling SNPs and Indels for and Assignment for CBB520 by Fred Dietrich at Duke, Fall 2018

cbb_design

cloudcamp2014

Examples for Mumbai Cloud Camp 2014

cloudconductor

CloudConductor is a workflow management system that generates and executes bioinformatics pipelines

cran_viz

flask-hello-world

Flask Hello World Example for Render

genpipes_flowchart

Automating flowchart creation for GenPipes pipeline runs

genpipes_fork

Genpipes fork with incorporation of flowchart creation engine

gffutils

GFF and GTF file manipulation and interconversion

gojs

JavaScript diagramming library for interactive flowcharts, org charts, design tools, planning tools, visual languages.

gwas_plink

Using PLINK and implementing ML methods for GWAS from Chloe-Agathe Azenott's workshop on efficient biomarker discovery

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

igv-reports

Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.

katacoda-scenarios

Katacoda Scenarios

latexit

ma2823_2016

Foundations of Machine Learning course at CentraleSupelec (Fall 2016)

misc_scripts

Collection of miscellaneous scripts that do not warrant a new repo

moodle-download-manager

Syncs files with Moodle

optimal_phage

We are trying to understand the impact of environmental stresses on the coexistence of phage-bacteria systems

pybedtools

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO

samspeccoen

Build sample-specific co-expression networks.

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

scantailor

snatch

Creating a multi player SNATCH game using the Evennia game engine

snatchv2

Online server for snatch, a word game regularly played at IIT Bombay.