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Nils Trost's Projects

3dscvis icon 3dscvis

A javascript tool for visualizing 3d embeddings

archr icon archr

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

babyplots icon babyplots

Babyplots is an easy to use library for creating interactive 3d graphs for exploring and presenting data.

babyplots_py icon babyplots_py

Babyplots is an easy to use library for creating interactive 3d graphs for exploring and presenting data. This is the python API that allows you to create babyplots visualizations in Jupyter notebooks.

ccapture.js icon ccapture.js

A library to capture canvas-based animations at a fixed framerate

celloracle icon celloracle

This is the alpha version of the CellOracle package

demo-webpiling-end-to-end icon demo-webpiling-end-to-end

Basically just a script to demonstrate a full end-to-end webpiling process to put OpenCV's ArUco module on the Web.

gif.js icon gif.js

JavaScript GIF encoding library

hexpression icon hexpression

Simple functions to create ggplot2 plots to visualize single cell expression data in 2D dimensionality reductions to avoid overplotting. Includes a wrapper for Seurat objects.

liger icon liger

R package for integrating and analyzing multiple single-cell datasets

nyanemone icon nyanemone

Adaptable video tracking software for automated behavioural analyses of sea anemones.

sc-compreg icon sc-compreg

R package for single-cell comparative regulatory analysis

scanpy icon scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

semantle_umap icon semantle_umap

Visually explore a game of semantle using a UMAP representation of the underlying word2vec word embedding.

urd icon urd

URD - Reconstruction of Branching Developmental Trajectories

zftracker icon zftracker

Adaptable video tracking software for automated thigmotaxis analyses of larval and adult zebrafish.

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