Comments (5)
dpryan79
commented on June 2, 2024
Weird, I'll have to test this on an OSX system after the holidays. The last time I tried this on a Mac it worked, but perhaps I've inadvertently broken that :(
Do you get any more output than that (e.g., the lines starting with clang)? That'd help me at least nail down where things are breaking.
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cguzman92
commented on June 2, 2024
I'll include them here, if you'd prefer a txt file of the entire error log I can send that to you through e-mail as well.
building 'pyBigWig' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -IlibBigWig -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c libBigWig/bwRead.c -o build/temp.macosx-10.11-x86_64-2.7/libBigWig/bwRead.o
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -IlibBigWig -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c libBigWig/bwStats.c -o build/temp.macosx-10.11-x86_64-2.7/libBigWig/bwStats.o
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -IlibBigWig -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c libBigWig/bwValues.c -o build/temp.macosx-10.11-x86_64-2.7/libBigWig/bwValues.o
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -IlibBigWig -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c libBigWig/io.c -o build/temp.macosx-10.11-x86_64-2.7/libBigWig/io.o
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -IlibBigWig -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c pyBigWig.c -o build/temp.macosx-10.11-x86_64-2.7/pyBigWig.o
pyBigWig.c:289:30: error: void function 'initpyBigWig' should not return a value [-Wreturn-type]
if(Py_AtExit(bwCleanup)) return NULL;
^ ~~~~
1 error generated.
error: command 'clang' failed with exit status 1
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dpryan79
commented on June 2, 2024
I hopefully just fixed that. Can you try the following:
pip install --user git+https://github.com/dpryan79/pyBigWig.git
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cguzman92
commented on June 2, 2024
Yep that seems to have fixed the problem!
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dpryan79
commented on June 2, 2024
Great, it was thankfully an easy fix.
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Related Issues (20)
- 1-based BigWig file as input HOT 2
- Error Installing pyBigWig HOT 11
- BigBed interval problem HOT 7
- Suppress logging/error messages HOT 2
- RuntimeError: Invalid interval bounds
- Document performance considerations? HOT 4
- Cannot add entries of value type int, but only float HOT 2
- support for osx-arm64 HOT 2
- numpy support broken in 0.3.18? HOT 1
- Create a BedGraph file using addEntries() throws segmentation fault HOT 2
- library import error HOT 4
- pyBigWig fails to find numpy installation when installing from PyPI HOT 5
- Writing a nan value should leave a gap HOT 7
- Can't enforce numpy features when pyBigWig is used as a dependency in downstream package HOT 5
- pip installation broken HOT 4
- Installing through pip not working HOT 9
- addHeader does not support multiple calls
- Support for python >=3.11 HOT 1
- Issue Downloading pyBigWig HOT 1
- Simple patch to resolve conflict with roundup() macro
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