Related Issues (20)
- secondary structure evaluation HOT 2
- Node classification tasks HOT 3
- Custom dataset. Data preprocessing HOT 1
- Asking about implementation of series connection of PLM & GNN in the FusionNetwork. HOT 2
- Passing CIF files directly into GearNet? HOT 2
- Inference on PDB file by conversion into torchdrug.data.PackedProtein or TorchDrug.data.Protein HOT 5
- TypeError: metaclass conflict: the metaclass of a derived class must be a (non-strict) subclass of the metaclasses of all its bases HOT 2
- What is input (Tensor) – input node representations for GearNet HOT 1
- Extract the structure embeddings HOT 1
- RuntimeError: shape '[31, 147]' is invalid for input of size 651 in extracting embbeding from pdb files HOT 6
- Seeking help for dataset HOT 4
- Problems in using FC dataset HOT 2
- Problems in using "fold_mc_gearnet_edge_ieconv.pth"
- how Fmax and AUPRC are calculated?
- About data_setting from species_start: 0 to species_end: 22 of alphafolddb_v2
- Why is the Batch Size for Downstream Tasks Set to 2? It Seems Quite Slow
- Working with batches of proteins with different sizes
- How to Fine-Tune My Pretrained Model on Downstream Tasks
- How to pass the protein pdb file to the released model weight: (mc_gearnet_edge.pth) HOT 1
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