TypeError: the JSON object must be str, not 'bytes' about singlecell-ige HOT 4 CLOSED

The error is gone after installed snakemake v5.2.4. Thanks for the help! @dcroote

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Hi @huangk3 - I think it may have to do with the snakemake version. Can you provide the output of the following:

snakemake --version
conda --version

from singlecell-ige.

Thanks for the response @dcroote. Here is the version info:

% snakemake --version
5.11.1
% conda --version
conda 4.10.3

from singlecell-ige.

Thanks @huangk3, I was able to reproduce your error with snakemake 5.11.1. Can you please downgrade to snakemake 5.2.4? If you created the conda env via the instructions in the readme, you should be able to do this via conda remove -y snakemake-minimal && conda install -y snakemake-minimal=5.2.4.

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