Comments (3)
dcouvin
commented on September 3, 2024
Hi @robinengler ,
Thank you for your message. Unfortunately, I have not seen this error yet.
Please try to re-install MacSyFinder following these instructions : https://macsyfinder.readthedocs.io/en/latest/installation.html
I hope this could help.
Maybe @bneron could provide further help.
Best regards,
@dcouvin
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dcouvin
commented on September 3, 2024
Hi @robinengler,
Otherwise, you can use the new Singularity container available at : https://crisprcas.i2bc.paris-saclay.fr/Home/Download
Best
from crisprcasfinder.
ftianRF
commented on September 3, 2024
It is due to the incompatibility of macsyfinder with BLAST+ 2.10.0.
https://githubhot.com/repo/gem-pasteur/macsyfinder/issues/30
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Related Issues (20)
- CRISPRCasFinder.pl: command not found HOT 5
- Using new version of MacSyFinder on CRISPRCasFinder.pl HOT 7
- Too many intermediate files HOT 2
- CRISPERCasFinder does not handle vmatch results with multi line sequence correctly HOT 2
- Recent Singularity container is not recognized by Singularity versions <2.6.1 HOT 1
- Installation of Date::Calc failed HOT 3
- Dependency issues using Singularity image HOT 1
- Flank sequence near contig edge has negative coordinate HOT 1
- MSG: No file or directory called HOT 1
- Error in `muscle': double free or corruption (out): 0x00007ffceb581bf0 HOT 12
- How to use CRISPRCasFinder through singularity container HOT 4
- error in using crisprcasfinder with subprocess, snakemake and Rscript HOT 10
- The result of CRISPR-Cas_summary.tsv don't have Cas Types/Subtypes HOT 1
- No CRISPR/CAS detection on fasta files with more than 100 contigs HOT 1
- CRISPRCasFinder.pl did not report any errors but produced three unknown core files HOT 2
- [FEATURE REQUEST] macsyfinder models custom dir
- Could not open output GFF in result/result2/ because No such file or directory
- json output sometimes "forgets" closing ] in "Cas": [] line
- a particular set of parameters for CCF fails to produce results for all genomes we tried HOT 3
- Error when result folder is not in source folder
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