dbolser-ebi Goto Github PK

arrayexpress-cram-submission

A python pipeline for submitting CRAM files generated by ArrayExpress to the European Nucleotide Archive (ENA)

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bio-db-hts

Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib

brew

🍺 The missing package manager for macOS

copy-of-eg-pipelines

coverage

Scripts for looking at 'coverage' of various Whole Genome Alignment methods across any given set of 'ranges' using Set::IntRange

cpanfiles

A collection of additional cpanfiles that have no natural home with any project

dream_tf_net

Convolutional Neural Networks for the Encode-Dream Transcription Factor Binding Challenge

eg-biomart-perl

Ensembl Genomes specific fork of BioMart martview. Contains modifications to support Ensembl Genomes databases.

eg-web-common

modules/files required to set up any of the EG genome browsers

eg-web-plants

modules required to set up EG Plants mirror

eg-web-pre

modules/files required to set up any of the EG pre website

ensembl

The Ensembl Core Perl API and SQL schema

ensembl-analysis

Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines

ensembl-compara

The Ensembl Compara Perl API and SQL schema

ensembl-datacheck

Code for checking Ensembl databases during release production

ensembl-funcgen

Ensembl Funcgen Perl API and SQL schema

ensembl-prodinf-core

ensembl-production

Ensembl Production code

ensembl-retreat-2018

Some files used by the "MPI/multi-threaded software in eHive/LSF" session during the Ensembl retreat 2018

ensembl-variation

The Ensembl Variation Perl API and SQL schema

ensj-healthcheck

Ensembl's Automated QC Framework

genoverse

HTML5 scrollable genome browser

homebrew-science

:beer::microscope: Scientific formulae for the Homebrew package manager

lastz

Program for aligning DNA sequences, a pairwise aligner.

lib

mysqlnag

Slow like an old nag

plant-ontology

Repository for the Plant Ontology

plantstrackhub

Pipeline that creates trackhubs given study ids and puts them in the Ensembl Track Hub Registry

samtools

This is the official development repository for samtools.