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annotated_deep_learning_paper_implementations

🧑‍🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

awesome_lists

Awesome Lists for Tenure-Track Assistant Professors and PhD students. (助理教授/博士生生存指南)

bavaria

Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq datasets

bioinformatic_tutorial

生物信息学相关的教程

chatgpt_academic

科研工作专用ChatGPT/GLM拓展，特别优化学术Paper润色体验，模块化设计支持自定义快捷按钮&函数插件，支持代码块表格显示，Tex公式双显示，新增Python和C++项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持gpt-3.5/gpt-4/chatglm

chromograph

Camiel's scATAC-seq analysis pipeline

dbinary

dbinary.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

dbinary1.github.io

deep-learning-papers-reading-roadmap

Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!

deeplearning

Python for《Deep Learning》，该书为《深度学习》(花书) 数学推导、原理剖析与源码级别代码实现

doulabrotation_2023

This repository was used to contain the tutorials of telemere length calculation for single cell DNA-seq data.

epiverse

Epiverse is the fundamental package for single cell Assay for Transposase-Accessible Chromatin using sequencing (scATAC-seq) with Python.

fetal_brain_multiomics

Supplementary files and notebooks to recreate figures.

fun-rec

推荐系统入门教程，在线阅读地址：https://datawhalechina.github.io/fun-rec/

gastric_scrna

This repository stores the code I used for analyzing scRNA seq of Helicobacter pylori infection

gbm_spatial

manuscript-templates

LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.

mfi

omicverse

A python library for multi omics included bulk and single cell RNA-seq analysis.

omicverse-reproducibility

Reproducibility of results/figures from omicverse paper

openbiomed

pycomplexheatmap

PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

retinoblastoma_analysis

This repository contains all the codes currently used in the retinoblastoma analysis.

scltnn

A composite regression neural network for latent timing prediction of single-cell RNA-seq data

single-cell-papers-with-code

Papers with code for single cell related papers

statistical-learning-method-solutions-manual

统计学习方法习题解答，在线阅读地址：https://datawhalechina.github.io/statistical-learning-method-solutions-manual

weekly

生信爱好者周刊（每周日发布）