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beyond-bar-and-box-plots

Hands–on code to create and style chart alternatives with ggplot2

biccn_m1_evo

Analysis for BICCN cross-species primary motor cortex project

bioinformatics-with-python-cookbook-second-edition

Bioinformatics with Python Cookbook Second Edition, published by Packt

bravo_et_al_eyeantennaldisc

Code for reproducing the figures presented in the manuscript 'Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics' (Bravo et al., 2020)

byvstzp_2020

This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary motor cortex".

ccle_heterogeneity

cellcensusmotorcortex

Resources associated with "A multimodal cell census and atlas of the mammalian primary motor cortex"

cerebellum-atlas-analysis

Code and scripts used in analysis of snRNAseq cerebellar cortex atlas

complexheatmap

http://www.bioinformatics-made-simple.com/2018/04/how-to-make-heatmap-with-multiple.html

datascience

Data Science in Julia course for JuliaAcademy.com, taught by Huda Nassar

machine-learning

mini-atlas

Phenotypic variation of transcriptomic cell types in mouse motor cortex

oneliners

Useful bash one-liners for bioinformatics.

pytorch-deep-learning

Deep Learning (with PyTorch)

sars-cov-2_ferret_bal

sc_mixology

This contains the dataset for comparing scRNA-seq analysis methods

scrna_seq_clk_vs_dans

scrna_seq_clock_neurons

Analysis of scRNA_seq of Drosophila clock neurons in LD and DD conditions around the clock

singlecellrna_melanoma_paper

stat_rethinking_2022

Statistical Rethinking course winter 2022

taiji

All-in-one analysis pipeline

vsn-pipelines

A repository of pipelines for single-cell data in Nextflow DSL2