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antibiofilm-peptide-prediction

basic-statistics-with-python

This respository contains fundermental knowledege needed to perform explorative, descriptive and inferential statistics with examples in python programming

bioinformatics-with-python-cookbook-second-edition

Bioinformatics with Python Cookbook Second Edition, published by Packt

celegans-cell2cell

Analyses for cell-cell interactions in C. elegans

coriellindex_vcf_180306

CoriellIndex vcf files

data-vizualization-with-pyhton

dataxplora

Config files for my GitHub profile.

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

galaxy-workflows

Intergalactic Workflow Commission

genescf

Gene Set Clustering based on Functional annotation

hap.py

Haplotype VCF comparison tools

human-phenotype-ontology

Ontology for the description of human clinical features

kallisto-snakemake

learning-linux-winfrednyoroka

learning-linux-winfrednyoroka created by GitHub Classroom

machine-learning-book

Code Repository for Machine Learning with PyTorch and Scikit-Learn

machine-learning-in-r

Machine Learning in R

mastering-shiny

Mastering Shiny: a book

modulome-workflow

Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA

mofa

Multi-Omics Factor Analysis

nichenetr

NicheNet: predict active ligand-target links between interacting cells

omics

CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

python-fundamentals

This is python tutorial

rtg-tools

RTG Tools: Utilities for accurate VCF comparison and manipulation

single-cell-analysis-best-practices

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

speedseq

A flexible framework for rapid genome analysis and interpretation

variant-calling-pipeline-gatk4

Variant Calling Pipeline Using GATK4 and Nextflow

wdl_germline_pipeline

development location for a wdl based germline pipeline with scatter gather parallelization

xenopus-phenotype-ontology

XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and X. tropicalis.