Daniel Naro's Projects
Beacon v2 Reference Implementation (API)
Beacon v2 Reference Implementation (Data ingestion tools)
Python tool to modify LiftOver chain files, and check them against Fasta Dict and BAM headers.
Contrastive unpaired image-to-image translation, faster and lighter training than cyclegan (ECCV 2020, in PyTorch)
Genomics-oriented Context-Adaptive Binary Arithmetic Coding
A tool for profiling long STRs from short reads
From a dict file, generate a BED file covering the entirety of the main sequences.
GRIDSS: the Genomic Rearrangement IDentification Software Suite
Various algorithms for analysing genomics data
Modifies the chromosome names in a VCF
MuRaL is a deep learning framework for estimating single-nucleotide mutation rates across the genome.
C++ library for CUDA accelerated computation of Non-negative Matrix Factorizations (NMF)
PanPipe Workflow Manager
Tool to rename sequence names in a SAM header
Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".