danieljdenman Goto Github PK

affinewarp

aibs_datastructure

tools for common structuring of behavior, ophys, and/or ephys data

binder

ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes

h2c

Jupyter notebooks for Hood to Coast leg assigment

kilosort2

Fast spike sorting with drift correction for up to a thousand channels

mouse_chromatic

notebooks and code for Denman et al., 2016, Journal of Neuroscience and Denman et al., 2018, eLife

mouse_tunnel

Panda3D-based version of a visual engagement task designed for neurophysiology

nanoz

python code for impedance measurements from nanoZ

neuropixels

tools for extraction of Neuropixel probe features, including data-driven localization of probe in a mouse brain

neuropixels-pxi

Plugin for PXIe-based Neuropixels hardware

neuropixels_invitro

for analysis of Neuropixels data on the Allen multi-patch rigs

nrsc7610

intro to python for CU Anschutz NRSC7610 Systems Neuroscience

nrsc7657

for University of Colorado School of Medicine

nspbootcamp

University of Colorado Neuroscience Graduate Program 1st year quantitative and coding bootcamp, Python

phy

Interactive electrophysiological data analysis package

sorting_quality

package for quantitatively assessing the quality of spike sorting