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Alex Carlin's Projects

bagel-data icon bagel-data

Published data and exploratory data visualizations for the Bagel project

bagel-draft icon bagel-draft

Draft of first Bagel paper reporting kinetics for 103 mutants

bagel-learn icon bagel-learn

Playground for modeling and machine learning for the Bagel project

bagel-project icon bagel-project

How to build a large dataset of enzyme variants to evaluate enzyme design algorithms

bglb-py icon bglb-py

PyRosetta simulations of BglB mutations

bglb_family icon bglb_family

Quantitative prediction of mutant function across an enzyme family

bglb_thermal icon bglb_thermal

Large data set of thermal stabilities for mutants of BglB, and associated publication

bigboogie.info icon bigboogie.info

The code for "bigboogie.info", Alex's essays about guitar playing

biotite icon biotite

A comprehensive library for computational molecular biology

blind-searcher icon blind-searcher

A blind searching algorithm for systematically preturbing protein sequence during design simulations

boxi icon boxi

De novo enzyme design of oxirane:NAD(P)H reductase enzyme

chemcomm-tmo icon chemcomm-tmo

Code and raw data for my paper "Biocatalytic conversion of ethylene…"

cookbook icon cookbook

Protocols for common lab tasks in cookbook format

cribbage icon cribbage

AI-powered cribbage for your command line

deaminase icon deaminase

Deep mutational scan of human adenosine deaminase

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