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10x-scatac-2019

Publication Page for Satpathy*, Granja* et al 2019

atac-pipe

Analysis pipeline for ATAC-seq Data

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bios201

Course material for "BIOS 201: Next-generation sequencing and applications"

bpnet

Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them

cellchat

R toolkit for inference and analysis of cell-cell communication from single-cell data

chip-seq_preprocess

A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

crisphiermix

crispriadesign

deeplearning-biology

A list of deep learning implementations in biology

embryotimecourse2018

Data and analysis scripts for our Embryo Timecourse paper.

excelerate-scrnaseq

Single RNA-seq data analysis with R (Finland, May, 2019)

haodi_sarcomere

liulab

Official website for Liu Lab

my_lab_website

myrepo

testing

nextjs-notion-starter-kit

Deploy your own Notion-powered website in minutes with Next.js and Vercel.

noteable_test

pipelines_for_chip-seq_analysis

Pipelines for ChIP-seq analysis, such as peak calling, differential enrichment detection, and pausing index calculation for PolII.

python_tutorial

Python机器学习体系构建教程

rprogdatascience

rsoptsc

Cell-cell communication and lineage inference for scRNA-seq data

scatacseq-analysis-notes

my notes for scATACseq analysis

screenprocessing

scrna-seq-workshop-fall-2019

Harvard FAS informatics scRNAseq workshop website

slingshot

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

snapatac

Single Nucleus Analysis Pipeline for ATAC-seq

tutorials

CellProfiler tutorial pipelines and images