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Hi, I'm Carlos

I'm a chilean biochemist interested in understanding living organisms' biochemical evolution through mathematical and computational models. In my spare time I'm a Neovim plugin developer and Julia Language enthusiast, as well as part-time photographer.

What am I up to?

I'm currently working at Protera Bioscience developing tooling and predictive models for madi:TM: SaaS protein-engineering platform.

For a more in-depth view of my experience, please refer to my CV (también disponible en español).

Projects

Science

Neovim

Julia Language

  • SimSpread.jl, a software package for the Julia programming language that implements the SimSpread formalism for link prediction in graphs.

Personal

  • recetario, a compendium of miscellaneous script for all things science, ML, DS, Julia, etc.

Last edit: 2024-06-03

Carlos Vigil-Vásquez's Projects

aoc icon aoc

Advent of Code solutions

cvigilv icon cvigilv

Config files for my GitHub profile.

dmenu icon dmenu

Personal fork of suckless dmenu

framer icon framer

Simple bash script for framing your photos

mateo.nvim icon mateo.nvim

Personal scientific-computing-oriented Neovim configuration

patana.nvim icon patana.nvim

Neovim colorscheme inspired in Patana Trufillo from 31 Minutos

puntos icon puntos

The classic "dotfiles" personal repo that every developer should have.

recetario icon recetario

Programming cookbook for all chemistry, biology, ML, data science & Linux related stuff

residuefisher icon residuefisher

Bioinformatics protocol that aims at mining information at the sequence and structure level of protein chain to detect possible evolutionary conserved residues.

simspread icon simspread

De novo target prediction by chemical similarity-guided network-based inference

simspread.jl icon simspread.jl

SimSpread is a novel approach for predicting interactions between two distinct set of nodes, query and target nodes, using a similarity measure vector between query nodes as a meta-description in combination with the network-based inference for link prediction.

wu2017 icon wu2017

Datasets from "SDTNBI: an integrated network and chemoinformatics tool for systematic prediction of drug-target interactions and drug repositioning" (Wu, 2017)

yamanishi2008 icon yamanishi2008

Datasets from ""Prediction of drug-target interaction networks from the integration of chemical and genomic spaces" (Yamanishi, 2008)

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