ctmrbio Goto Github PK
Name: CTMR
Type: Organization
Bio: Centre for Translational Microbiome Research
Location: Karolinska Instititute, Stockholm, Sweden
Blog: http://ki.se/en/research/centre-for-translational-microbiome-research-ctmr
Name: CTMR
Type: Organization
Bio: Centre for Translational Microbiome Research
Location: Karolinska Instititute, Stockholm, Sweden
Blog: http://ki.se/en/research/centre-for-translational-microbiome-research-ctmr
Workflows and scripts for amplicon sequencing processing
BACTpipe: An assembly and annotation pipeline for bacterial genomics
Some ideas on things to learn to get started with bioinformatics
The database contains a collection of sequences for BVAB (Bacterial vaginosis associated bacteria) and common vaginal Lactobacillus species.
Customizations for our GenoLogics BaseSpace Clarity LIMS
Code for Tumor Microbiome is associated with survival in late stage colorectal cancer
Custom Docker image for Apache Superset
Scripts used to facilitate the interface between bioinformatic and experimental microbiology
Dockerfiles used at CTMR
Notebooks in Jupyter that can be used for filling out meta data checklists required for uploading data to the ENA
A small workflow that simulates metagenomes for use in estimating the required sequencing depth for different type of microbiome samples
Notebooks for the estimate_seq_depth project
List scanning application
Database for annotating vaginal communities
Print CTMR labels on Zebra printer
comparative genomic analysis for Pseudomonas boanensis DB1
Run Rstudio with Singularity
Run simple commands in parallel on Slurm
Compute ETag of local file and compare to file on S3
Minhash/pangenome analysis notebooks and associated files
SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data
Compute job statistics for Slurm jobs
Simple Snakemake example
Compare samples based on kmers using Sourmash sketch
StaG Metagenomic Workflow Collaboration
A tool to assign VAginaL DYnamic categories to individuals based on their Valencia CST assignments
Script for printing labels on Zebra GK420t
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.